diff options
Diffstat (limited to 'src')
| -rw-r--r-- | src/lib/CMakeLists.txt | 1 | ||||
| -rw-r--r-- | src/lib/btree.c | 481 | ||||
| -rw-r--r-- | src/lib/btree.h | 46 | ||||
| -rw-r--r-- | src/lib/tests/CMakeLists.txt | 1 | ||||
| -rw-r--r-- | src/lib/tests/btree_test.c | 80 | 
5 files changed, 609 insertions, 0 deletions
| diff --git a/src/lib/CMakeLists.txt b/src/lib/CMakeLists.txt index 44e34139..34ae6ae4 100644 --- a/src/lib/CMakeLists.txt +++ b/src/lib/CMakeLists.txt @@ -28,6 +28,7 @@ endif()  set(SOURCE_FILES    # Add source files here    bitmap.c +  btree.c    cacep.c    cdap.c    cdap_req.c diff --git a/src/lib/btree.c b/src/lib/btree.c new file mode 100644 index 00000000..645e7c7a --- /dev/null +++ b/src/lib/btree.c @@ -0,0 +1,481 @@ +/* + * Ouroboros - Copyright (C) 2016 - 2017 + * + * B-trees + * + *    Dimitri Staessens <dimitri.staessens@intec.ugent.be> + *    Sander Vrijders   <sander.vrijders@intec.ugent.be> + * + * This library is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * version 2.1 as published by the Free Software Foundation. + * + * This library is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with this library; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA + * 02110-1301 USA + */ + +#include <ouroboros/errno.h> + +#include "btree.h" + +#include <stdlib.h> +#include <stdbool.h> +#include <assert.h> +#include <string.h> +#include <sys/types.h> + +/* Reasonable limit to avoid overflow of ssize_t */ +#define BTREE_MAX_ORDER (1 << 20) + +struct key_val { +        uint32_t key; +        void *   val; +}; + +/* Node in btree of order k. */ +struct btnode { +        size_t           k; +        size_t           used; + +        bool             leaf; + +        struct key_val * keyvals; + +        struct btnode ** children; +}; + +struct btree { +        struct btnode * root; +        size_t          k; +}; + +/* Binary search for arr[i].key <= key. */ +static size_t search_key(const struct key_val * arr, +                         size_t                 len, +                         uint32_t               key) +{ +        ssize_t lft = -1; +        ssize_t rgt = len; +        ssize_t mid; + +        while (lft + 1 < rgt) { +                mid = (lft + rgt) / 2; +                if (arr[mid].key == key) +                        return mid; +                else if (arr[mid].key < key) +                        lft = mid; +                else +                        rgt = mid; +        } + +        return rgt; +} + +static struct btnode * btnode_create(size_t k) +{ +        struct btnode * node; +        size_t i = 0; + +        node = malloc(sizeof(*node)); +        if (node == NULL) +                return NULL; + +        node->keyvals = malloc(sizeof(*node->keyvals) * k); +        if (node->keyvals == NULL) { +                free(node); +                return NULL; +        } + +        node->children = malloc(sizeof(*node->children) * (k + 1)); +        if (node->children == NULL) { +                free(node->keyvals); +                free(node); +                return NULL; +        } + +        for (i = 0; i < k; ++i) { +                node->children[i] = NULL; +                node->keyvals[i].key = 0; +                node->keyvals[i].val = NULL; +        } + +        node->k    = k; +        node->used = 0; +        node->leaf = true; + +        return node; +} + +static void btnode_destroy(struct btnode * node) +{ +        size_t i = 0; + +        assert(node); + +        for (i = 0; !node->leaf && i <= node->used; ++i) +                btnode_destroy(node->children[i]); + +        free(node->children); +        free(node->keyvals); +        free(node); +} + +static int btnode_insert(struct btnode *  node, +                         struct key_val   kv, +                         struct key_val * med, +                         struct btnode ** split) +{ +        size_t p; + +        assert(node); +        assert(split); +        assert(kv.val); + +        p = search_key(node->keyvals, node->used, kv.key); + +        if (p < node->used && node->keyvals[p].key == kv.key) +                return -EPERM; + +        assert(p < node->k); + +        if (node->leaf) { +                memmove(&node->keyvals[p + 1], +                        &node->keyvals[p], +                        sizeof(*node->keyvals) * (node->used - p)); +                node->keyvals[p] = kv; +                node->used++; +        } else { +                struct btnode * rgt_s = NULL; +                struct key_val m; + +                if (btnode_insert(node->children[p], kv, &m, &rgt_s)) +                        return -1; +                if (rgt_s != NULL) { +                        memmove(&node->keyvals[p + 1], +                                &node->keyvals[p], +                                sizeof(*node->keyvals) * (node->used - p)); +                        node->keyvals[p] = m; +                        memmove(&node->children[p + 2], +                                &node->children[p + 1], +                                sizeof(*node->children) +                                * (node->used - p)); +                        node->children[p + 1] = rgt_s; +                        node->used++; +                } +        } + +        if (node->used == node->k) { +                size_t mid = node->used / 2; +                *med = node->keyvals[mid]; +                *split = btnode_create(node->k); +                if (*split == NULL) +                        return -ENOMEM; + +                (*split)->used = node->used - mid - 1; +                (*split)->leaf = node->leaf; + +                memmove((*split)->keyvals, +                        &node->keyvals[mid + 1], +                        sizeof(*node->keyvals) * (*split)->used); +                if (!node->leaf) +                        memmove((*split)->children, +                                &node->children[mid + 1], +                                sizeof(*node->children) * ((*split)->used + 1)); + +                node->used = mid; +        } + +        return 0; +} + +/* Merge child i with child i + 1 */ +void merge(struct btnode * node, +           size_t          i) +{ +        struct btnode * chld = node->children[i]; +        struct btnode * next = node->children[i + 1]; + +        chld->keyvals[node->k / 2 - 1] = node->keyvals[i]; + +        memmove(&chld->keyvals[node->k / 2], +                &next->keyvals[0], +                sizeof(*next->keyvals) * next->used); + +        if (!chld->leaf) +                memmove(&chld->children[node->k / 2], +                        &next->children[0], +                        sizeof(*next->children) * next->used + 1); + +        memmove(&node->keyvals[i], +                &node->keyvals[i + 1], +                sizeof(*node->keyvals) * node->used - i - 1); + +        memmove(&node->children[i + 1], +                &node->children[i + 2], +                sizeof(*node->children) * node->used - i); + +        chld->used += next->used + 1; +        node->used--; + +        btnode_destroy(next); +} + +/* Handle starving child at index i. */ +static void fill(struct btnode * node, +                 size_t          i) +{ +        struct btnode * chld = node->children[i]; + +        /* Feed from previous sibling. */ +        if (i != 0 && node->children[i - 1]->used >= node->k / 2) { +                struct btnode * prev = node->children[i - 1]; + +                memmove(&chld->keyvals[1], +                        &chld->keyvals[0], +                        sizeof(*chld->keyvals) * chld->used); + +                chld->keyvals[0] = node->keyvals[i - 1]; + +                if (!chld->leaf) +                        memmove(&chld->children[1], +                                &chld->children[0], +                                sizeof(*chld->children) * (chld->used + 1)); + +                if (!node->leaf) +                        chld->children[0] = prev->children[prev->used]; + +                node->keyvals[i - 1] = prev->keyvals[prev->used - 1]; + +                ++chld->used; +                --prev->used; + +                return; +        } + +        /* Feed from next sibling. */ +        if (i != node->used && node->children[i + 1]->used >= node->k / 2) { +                struct btnode * next = node->children[i + 1]; +                chld->keyvals[chld->used] = node->keyvals[i]; + +                if (!chld->leaf) +                        chld->children[chld->used + 1] = next->children[0]; + +                node->keyvals[i] = next->keyvals[0]; + +                memmove(&next->keyvals[0], +                        &next->keyvals[1], +                        sizeof(*next->keyvals) * next->used); + +                if (!next->leaf) +                        memmove(&next->children[0], +                                &next->children[1], +                                sizeof(*next->children) * next->used); + +                ++chld->used; +                --next->used; + +                return; +        } + +        /* Cannibalize sibling. */ +        if (i != node->used) +                merge(node, i); +        else +                merge(node, i - 1); +} + +static struct key_val btnode_pred(struct btnode * node, +                                  size_t          i) +{ +        struct btnode * pred = node->children[i - 1]; +        while (!pred->leaf) +                pred = pred->children[pred->used]; + +        return pred->keyvals[pred->used -1]; +} + +static struct key_val btnode_succ(struct btnode * node, +                                  size_t          i) +{ +        struct btnode * succ = node->children[i + 1]; +        while (!succ->leaf) +                succ = succ->children[0]; +        return succ->keyvals[0]; +} + +static int btnode_delete(struct btnode * node, +                         uint32_t        key) +{ +        size_t i; + +        assert(node); + +        i = search_key(node->keyvals, node->used, key); + +        if (i < node->used && node->keyvals[i].key == key) { +                if (node->leaf) { +                        memmove(&node->keyvals[i], +                                &node->keyvals[i + 1], +                                sizeof(*node->keyvals) * (node->used - i - 1)); + +                        --node->used; +                } else { +                        if (node->children[i]->used >= node->k / 2) { +                                node->keyvals[i] = btnode_pred(node, i); +                                btnode_delete(node->children[i], +                                              node->keyvals[i].key); +                        } else if (node->children[i + 1]->used >= node->k / 2) { +                                node->keyvals[i] = btnode_succ(node, i); +                                btnode_delete(node->children[i + 1], +                                              node->keyvals[i].key); +                        } else { +                                merge(node, i); +                                btnode_delete(node, key); +                        } +                } +        } else { +                if (node->leaf) { +                        return -1; /* value not in tree */ +                } else { +                        bool flag = (i == node->used ? true : false); +                        if (node->children[i]->used > node->children[i]->k / 2) +                                fill(node, i); +                        if (flag && i > node->used) +                                btnode_delete(node->children[i - 1], key); +                        else +                                btnode_delete(node->children[i + 1], key); +                } +        } + +        return 0; +} + +struct btree * btree_create(size_t k) +{ +        struct btree * tree = malloc(sizeof(*tree)); +        if (tree == NULL) +                return NULL; + +        if (k > BTREE_MAX_ORDER) +                return NULL; + +        tree->k = k; +        tree->root = NULL; + +        return tree; +} + +void btree_destroy(struct btree * tree) +{ +        if (tree == NULL) +                return; + +        if (tree->root != NULL) +                btnode_destroy(tree->root); + +        free(tree); +} + +int btree_insert(struct btree * tree, +                 uint32_t       key, +                 void *         val) +{ +        struct btnode * rgt = NULL; +        struct key_val kv = {key, val}; +        struct key_val med; + +        if (tree == NULL || val == NULL) +                return -EINVAL; + +        if (tree->root == NULL) +                tree->root = btnode_create(tree->k); + +        if (tree->root == NULL) +                return -ENOMEM; + +        if (btnode_insert(tree->root, kv, &med, &rgt)) +                return -1; + +        if (rgt != NULL) { +                struct btnode * lft = btnode_create(tree->root->k); +                if (lft == NULL) +                        return -ENOMEM; + +                lft->used = tree->root->used; +                lft->leaf = tree->root->leaf; + +                memmove(lft->keyvals, +                        tree->root->keyvals, +                        sizeof(*tree->root->keyvals) * tree->root->used); +                memmove(lft->children, +                        tree->root->children, +                        sizeof(*tree->root->children) * (tree->root->used + 1)); + +                tree->root->used = 1; +                tree->root->leaf = false; +                tree->root->keyvals[0] = med; +                tree->root->children[0] = lft; + +                tree->root->children[1] = rgt; +        } + +        return 0; +} + +int btree_remove(struct btree * tree, +                 uint32_t       key) +{ +        if (tree == NULL) +                return -EINVAL; + +        if (tree->root == NULL) +                return 0; + +        btnode_delete(tree->root, key); + +        if (tree->root->used == 0) { +                if (tree->root->leaf) { +                        btnode_destroy(tree->root); +                        tree->root = NULL; +                } else { +                        tree->root = tree->root->children[0]; +                } +        } + +        return 0; +} + +static void * btnode_search(struct btnode * node, +                            uint32_t        key) +{ +        size_t i; + +        assert(node); + +        i = search_key(node->keyvals, node->used, key); + +        if (node->keyvals[i].key == key) +                return node->keyvals[i].val; + +        if (node->children[i]) +                return btnode_search(node->children[i], key); + +        return NULL; +} + +void * btree_search(struct btree * tree, +                    uint32_t       key) +{ + +        if (tree == NULL || tree->root == NULL) +                return NULL; + +        return btnode_search(tree->root, key); +} diff --git a/src/lib/btree.h b/src/lib/btree.h new file mode 100644 index 00000000..79467099 --- /dev/null +++ b/src/lib/btree.h @@ -0,0 +1,46 @@ +/* + * Ouroboros - Copyright (C) 2016 - 2017 + * + * B-trees + * + *    Dimitri Staessens <dimitri.staessens@intec.ugent.be> + * + * This library is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * version 2.1 as published by the Free Software Foundation. + * + * This library is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with this library; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA + * 02110-1301 USA + */ + +#ifndef OUROBOROS_LIB_BTREE_H +#define OUROBOROS_LIB_BTREE_H + +#include <stddef.h> +#include <stdint.h> + +struct btree; + +/* Create a B-tree of order k */ +struct btree * btree_create(size_t k); + +void           btree_destroy(struct btree * tree); + +int            btree_insert(struct btree * tree, +                            uint32_t       key, +                            void *         val); + +int            btree_remove(struct btree * tree, +                            uint32_t       key); + +void *         btree_search(struct btree * tree, +                            uint32_t       key); + +#endif /* OUROBOROS_LIB_BTREE_H */ diff --git a/src/lib/tests/CMakeLists.txt b/src/lib/tests/CMakeLists.txt index 85535399..72455aa2 100644 --- a/src/lib/tests/CMakeLists.txt +++ b/src/lib/tests/CMakeLists.txt @@ -4,6 +4,7 @@ get_filename_component(PARENT_DIR ${PARENT_PATH} NAME)  create_test_sourcelist(${PARENT_DIR}_tests test_suite.c                         # Add new tests here                         bitmap_test.c +                       btree_test.c                         crc32_test.c                         hashtable_test.c                         sha3_test.c diff --git a/src/lib/tests/btree_test.c b/src/lib/tests/btree_test.c new file mode 100644 index 00000000..257a7e37 --- /dev/null +++ b/src/lib/tests/btree_test.c @@ -0,0 +1,80 @@ +/* + * Ouroboros - Copyright (C) 2016 - 2017 + * + * Test of the B-tree implementation + * + *    Dimitri Staessens <dimitri.staessens@intec.ugent.be> + * + * This program is free software; you can redistribute it and/or modify + * it under the terms of the GNU General Public License version 2 as + * published by the Free Software Foundation. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. + */ + + +#include "btree.h" + +#include <stdio.h> +#include <stdlib.h> + +#define MAX_BTREE_KEY 10000 + +int btree_test(int     argc, +               char ** argv) +{ +        struct btree * tree; + +        int i; + +        (void) argc; +        (void) argv; + +        tree = btree_create(32); +        if (tree == NULL) +                return -1; + +        if (btree_search(tree, 8) != NULL) { +                btree_destroy(tree); +                return -1; +        } + +        for(i = 0; i < MAX_BTREE_KEY; ++i) +                if (btree_insert(tree, i, &argv)) { +                        printf("Failed to add element.\n"); +                        btree_destroy(tree); +                        return -1; +                } + +        for (i = 0; i < MAX_BTREE_KEY / 10; ++i) +                if (btree_search(tree, rand() % MAX_BTREE_KEY) != &argv) { +                        printf("Added element not in tree.\n"); +                        btree_destroy(tree); +                        return -1; +                } + +        for (i = 0; i < MAX_BTREE_KEY / 10; ++i) +                if (btree_remove(tree, i)) { +                        printf("Failed to remove element.\n"); +                        btree_destroy(tree); +                        return -1; +                } + +        for (i = 0; i < MAX_BTREE_KEY / 10; ++i) +                if (btree_search(tree, rand() % MAX_BTREE_KEY / 10) != &argv) { +                        printf("Removed element found in tree.\n"); +                        btree_destroy(tree); +                        return -1; +                } + +        btree_destroy(tree); + +        return 0; +} | 
