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authordimitri staessens <dimitri.staessens@intec.ugent.be>2017-01-16 13:40:57 +0100
committerdimitri staessens <dimitri.staessens@intec.ugent.be>2017-01-16 15:53:17 +0100
commitfac7ffe8ea9f42ebcf67c011c944d165cbab3e3b (patch)
treef504b2fb750fa9228f2a96be3cd6477de09ed49a /src
parent4be42017e51ff506da3fbdf6d2682e91a66f02c1 (diff)
downloadouroboros-fac7ffe8ea9f42ebcf67c011c944d165cbab3e3b.tar.gz
ouroboros-fac7ffe8ea9f42ebcf67c011c944d165cbab3e3b.zip
lib: Add B-tree implementation
Adds an implementation of B-trees of order k (k children, min fill is k/2, max fill k - 1). Useful to implement indexes for faster lookups.
Diffstat (limited to 'src')
-rw-r--r--src/lib/CMakeLists.txt1
-rw-r--r--src/lib/btree.c481
-rw-r--r--src/lib/btree.h46
-rw-r--r--src/lib/tests/CMakeLists.txt1
-rw-r--r--src/lib/tests/btree_test.c80
5 files changed, 609 insertions, 0 deletions
diff --git a/src/lib/CMakeLists.txt b/src/lib/CMakeLists.txt
index 44e34139..34ae6ae4 100644
--- a/src/lib/CMakeLists.txt
+++ b/src/lib/CMakeLists.txt
@@ -28,6 +28,7 @@ endif()
set(SOURCE_FILES
# Add source files here
bitmap.c
+ btree.c
cacep.c
cdap.c
cdap_req.c
diff --git a/src/lib/btree.c b/src/lib/btree.c
new file mode 100644
index 00000000..645e7c7a
--- /dev/null
+++ b/src/lib/btree.c
@@ -0,0 +1,481 @@
+/*
+ * Ouroboros - Copyright (C) 2016 - 2017
+ *
+ * B-trees
+ *
+ * Dimitri Staessens <dimitri.staessens@intec.ugent.be>
+ * Sander Vrijders <sander.vrijders@intec.ugent.be>
+ *
+ * This library is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public License
+ * version 2.1 as published by the Free Software Foundation.
+ *
+ * This library is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ * Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public
+ * License along with this library; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
+ * 02110-1301 USA
+ */
+
+#include <ouroboros/errno.h>
+
+#include "btree.h"
+
+#include <stdlib.h>
+#include <stdbool.h>
+#include <assert.h>
+#include <string.h>
+#include <sys/types.h>
+
+/* Reasonable limit to avoid overflow of ssize_t */
+#define BTREE_MAX_ORDER (1 << 20)
+
+struct key_val {
+ uint32_t key;
+ void * val;
+};
+
+/* Node in btree of order k. */
+struct btnode {
+ size_t k;
+ size_t used;
+
+ bool leaf;
+
+ struct key_val * keyvals;
+
+ struct btnode ** children;
+};
+
+struct btree {
+ struct btnode * root;
+ size_t k;
+};
+
+/* Binary search for arr[i].key <= key. */
+static size_t search_key(const struct key_val * arr,
+ size_t len,
+ uint32_t key)
+{
+ ssize_t lft = -1;
+ ssize_t rgt = len;
+ ssize_t mid;
+
+ while (lft + 1 < rgt) {
+ mid = (lft + rgt) / 2;
+ if (arr[mid].key == key)
+ return mid;
+ else if (arr[mid].key < key)
+ lft = mid;
+ else
+ rgt = mid;
+ }
+
+ return rgt;
+}
+
+static struct btnode * btnode_create(size_t k)
+{
+ struct btnode * node;
+ size_t i = 0;
+
+ node = malloc(sizeof(*node));
+ if (node == NULL)
+ return NULL;
+
+ node->keyvals = malloc(sizeof(*node->keyvals) * k);
+ if (node->keyvals == NULL) {
+ free(node);
+ return NULL;
+ }
+
+ node->children = malloc(sizeof(*node->children) * (k + 1));
+ if (node->children == NULL) {
+ free(node->keyvals);
+ free(node);
+ return NULL;
+ }
+
+ for (i = 0; i < k; ++i) {
+ node->children[i] = NULL;
+ node->keyvals[i].key = 0;
+ node->keyvals[i].val = NULL;
+ }
+
+ node->k = k;
+ node->used = 0;
+ node->leaf = true;
+
+ return node;
+}
+
+static void btnode_destroy(struct btnode * node)
+{
+ size_t i = 0;
+
+ assert(node);
+
+ for (i = 0; !node->leaf && i <= node->used; ++i)
+ btnode_destroy(node->children[i]);
+
+ free(node->children);
+ free(node->keyvals);
+ free(node);
+}
+
+static int btnode_insert(struct btnode * node,
+ struct key_val kv,
+ struct key_val * med,
+ struct btnode ** split)
+{
+ size_t p;
+
+ assert(node);
+ assert(split);
+ assert(kv.val);
+
+ p = search_key(node->keyvals, node->used, kv.key);
+
+ if (p < node->used && node->keyvals[p].key == kv.key)
+ return -EPERM;
+
+ assert(p < node->k);
+
+ if (node->leaf) {
+ memmove(&node->keyvals[p + 1],
+ &node->keyvals[p],
+ sizeof(*node->keyvals) * (node->used - p));
+ node->keyvals[p] = kv;
+ node->used++;
+ } else {
+ struct btnode * rgt_s = NULL;
+ struct key_val m;
+
+ if (btnode_insert(node->children[p], kv, &m, &rgt_s))
+ return -1;
+ if (rgt_s != NULL) {
+ memmove(&node->keyvals[p + 1],
+ &node->keyvals[p],
+ sizeof(*node->keyvals) * (node->used - p));
+ node->keyvals[p] = m;
+ memmove(&node->children[p + 2],
+ &node->children[p + 1],
+ sizeof(*node->children)
+ * (node->used - p));
+ node->children[p + 1] = rgt_s;
+ node->used++;
+ }
+ }
+
+ if (node->used == node->k) {
+ size_t mid = node->used / 2;
+ *med = node->keyvals[mid];
+ *split = btnode_create(node->k);
+ if (*split == NULL)
+ return -ENOMEM;
+
+ (*split)->used = node->used - mid - 1;
+ (*split)->leaf = node->leaf;
+
+ memmove((*split)->keyvals,
+ &node->keyvals[mid + 1],
+ sizeof(*node->keyvals) * (*split)->used);
+ if (!node->leaf)
+ memmove((*split)->children,
+ &node->children[mid + 1],
+ sizeof(*node->children) * ((*split)->used + 1));
+
+ node->used = mid;
+ }
+
+ return 0;
+}
+
+/* Merge child i with child i + 1 */
+void merge(struct btnode * node,
+ size_t i)
+{
+ struct btnode * chld = node->children[i];
+ struct btnode * next = node->children[i + 1];
+
+ chld->keyvals[node->k / 2 - 1] = node->keyvals[i];
+
+ memmove(&chld->keyvals[node->k / 2],
+ &next->keyvals[0],
+ sizeof(*next->keyvals) * next->used);
+
+ if (!chld->leaf)
+ memmove(&chld->children[node->k / 2],
+ &next->children[0],
+ sizeof(*next->children) * next->used + 1);
+
+ memmove(&node->keyvals[i],
+ &node->keyvals[i + 1],
+ sizeof(*node->keyvals) * node->used - i - 1);
+
+ memmove(&node->children[i + 1],
+ &node->children[i + 2],
+ sizeof(*node->children) * node->used - i);
+
+ chld->used += next->used + 1;
+ node->used--;
+
+ btnode_destroy(next);
+}
+
+/* Handle starving child at index i. */
+static void fill(struct btnode * node,
+ size_t i)
+{
+ struct btnode * chld = node->children[i];
+
+ /* Feed from previous sibling. */
+ if (i != 0 && node->children[i - 1]->used >= node->k / 2) {
+ struct btnode * prev = node->children[i - 1];
+
+ memmove(&chld->keyvals[1],
+ &chld->keyvals[0],
+ sizeof(*chld->keyvals) * chld->used);
+
+ chld->keyvals[0] = node->keyvals[i - 1];
+
+ if (!chld->leaf)
+ memmove(&chld->children[1],
+ &chld->children[0],
+ sizeof(*chld->children) * (chld->used + 1));
+
+ if (!node->leaf)
+ chld->children[0] = prev->children[prev->used];
+
+ node->keyvals[i - 1] = prev->keyvals[prev->used - 1];
+
+ ++chld->used;
+ --prev->used;
+
+ return;
+ }
+
+ /* Feed from next sibling. */
+ if (i != node->used && node->children[i + 1]->used >= node->k / 2) {
+ struct btnode * next = node->children[i + 1];
+ chld->keyvals[chld->used] = node->keyvals[i];
+
+ if (!chld->leaf)
+ chld->children[chld->used + 1] = next->children[0];
+
+ node->keyvals[i] = next->keyvals[0];
+
+ memmove(&next->keyvals[0],
+ &next->keyvals[1],
+ sizeof(*next->keyvals) * next->used);
+
+ if (!next->leaf)
+ memmove(&next->children[0],
+ &next->children[1],
+ sizeof(*next->children) * next->used);
+
+ ++chld->used;
+ --next->used;
+
+ return;
+ }
+
+ /* Cannibalize sibling. */
+ if (i != node->used)
+ merge(node, i);
+ else
+ merge(node, i - 1);
+}
+
+static struct key_val btnode_pred(struct btnode * node,
+ size_t i)
+{
+ struct btnode * pred = node->children[i - 1];
+ while (!pred->leaf)
+ pred = pred->children[pred->used];
+
+ return pred->keyvals[pred->used -1];
+}
+
+static struct key_val btnode_succ(struct btnode * node,
+ size_t i)
+{
+ struct btnode * succ = node->children[i + 1];
+ while (!succ->leaf)
+ succ = succ->children[0];
+ return succ->keyvals[0];
+}
+
+static int btnode_delete(struct btnode * node,
+ uint32_t key)
+{
+ size_t i;
+
+ assert(node);
+
+ i = search_key(node->keyvals, node->used, key);
+
+ if (i < node->used && node->keyvals[i].key == key) {
+ if (node->leaf) {
+ memmove(&node->keyvals[i],
+ &node->keyvals[i + 1],
+ sizeof(*node->keyvals) * (node->used - i - 1));
+
+ --node->used;
+ } else {
+ if (node->children[i]->used >= node->k / 2) {
+ node->keyvals[i] = btnode_pred(node, i);
+ btnode_delete(node->children[i],
+ node->keyvals[i].key);
+ } else if (node->children[i + 1]->used >= node->k / 2) {
+ node->keyvals[i] = btnode_succ(node, i);
+ btnode_delete(node->children[i + 1],
+ node->keyvals[i].key);
+ } else {
+ merge(node, i);
+ btnode_delete(node, key);
+ }
+ }
+ } else {
+ if (node->leaf) {
+ return -1; /* value not in tree */
+ } else {
+ bool flag = (i == node->used ? true : false);
+ if (node->children[i]->used > node->children[i]->k / 2)
+ fill(node, i);
+ if (flag && i > node->used)
+ btnode_delete(node->children[i - 1], key);
+ else
+ btnode_delete(node->children[i + 1], key);
+ }
+ }
+
+ return 0;
+}
+
+struct btree * btree_create(size_t k)
+{
+ struct btree * tree = malloc(sizeof(*tree));
+ if (tree == NULL)
+ return NULL;
+
+ if (k > BTREE_MAX_ORDER)
+ return NULL;
+
+ tree->k = k;
+ tree->root = NULL;
+
+ return tree;
+}
+
+void btree_destroy(struct btree * tree)
+{
+ if (tree == NULL)
+ return;
+
+ if (tree->root != NULL)
+ btnode_destroy(tree->root);
+
+ free(tree);
+}
+
+int btree_insert(struct btree * tree,
+ uint32_t key,
+ void * val)
+{
+ struct btnode * rgt = NULL;
+ struct key_val kv = {key, val};
+ struct key_val med;
+
+ if (tree == NULL || val == NULL)
+ return -EINVAL;
+
+ if (tree->root == NULL)
+ tree->root = btnode_create(tree->k);
+
+ if (tree->root == NULL)
+ return -ENOMEM;
+
+ if (btnode_insert(tree->root, kv, &med, &rgt))
+ return -1;
+
+ if (rgt != NULL) {
+ struct btnode * lft = btnode_create(tree->root->k);
+ if (lft == NULL)
+ return -ENOMEM;
+
+ lft->used = tree->root->used;
+ lft->leaf = tree->root->leaf;
+
+ memmove(lft->keyvals,
+ tree->root->keyvals,
+ sizeof(*tree->root->keyvals) * tree->root->used);
+ memmove(lft->children,
+ tree->root->children,
+ sizeof(*tree->root->children) * (tree->root->used + 1));
+
+ tree->root->used = 1;
+ tree->root->leaf = false;
+ tree->root->keyvals[0] = med;
+ tree->root->children[0] = lft;
+
+ tree->root->children[1] = rgt;
+ }
+
+ return 0;
+}
+
+int btree_remove(struct btree * tree,
+ uint32_t key)
+{
+ if (tree == NULL)
+ return -EINVAL;
+
+ if (tree->root == NULL)
+ return 0;
+
+ btnode_delete(tree->root, key);
+
+ if (tree->root->used == 0) {
+ if (tree->root->leaf) {
+ btnode_destroy(tree->root);
+ tree->root = NULL;
+ } else {
+ tree->root = tree->root->children[0];
+ }
+ }
+
+ return 0;
+}
+
+static void * btnode_search(struct btnode * node,
+ uint32_t key)
+{
+ size_t i;
+
+ assert(node);
+
+ i = search_key(node->keyvals, node->used, key);
+
+ if (node->keyvals[i].key == key)
+ return node->keyvals[i].val;
+
+ if (node->children[i])
+ return btnode_search(node->children[i], key);
+
+ return NULL;
+}
+
+void * btree_search(struct btree * tree,
+ uint32_t key)
+{
+
+ if (tree == NULL || tree->root == NULL)
+ return NULL;
+
+ return btnode_search(tree->root, key);
+}
diff --git a/src/lib/btree.h b/src/lib/btree.h
new file mode 100644
index 00000000..79467099
--- /dev/null
+++ b/src/lib/btree.h
@@ -0,0 +1,46 @@
+/*
+ * Ouroboros - Copyright (C) 2016 - 2017
+ *
+ * B-trees
+ *
+ * Dimitri Staessens <dimitri.staessens@intec.ugent.be>
+ *
+ * This library is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public License
+ * version 2.1 as published by the Free Software Foundation.
+ *
+ * This library is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ * Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public
+ * License along with this library; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
+ * 02110-1301 USA
+ */
+
+#ifndef OUROBOROS_LIB_BTREE_H
+#define OUROBOROS_LIB_BTREE_H
+
+#include <stddef.h>
+#include <stdint.h>
+
+struct btree;
+
+/* Create a B-tree of order k */
+struct btree * btree_create(size_t k);
+
+void btree_destroy(struct btree * tree);
+
+int btree_insert(struct btree * tree,
+ uint32_t key,
+ void * val);
+
+int btree_remove(struct btree * tree,
+ uint32_t key);
+
+void * btree_search(struct btree * tree,
+ uint32_t key);
+
+#endif /* OUROBOROS_LIB_BTREE_H */
diff --git a/src/lib/tests/CMakeLists.txt b/src/lib/tests/CMakeLists.txt
index 85535399..72455aa2 100644
--- a/src/lib/tests/CMakeLists.txt
+++ b/src/lib/tests/CMakeLists.txt
@@ -4,6 +4,7 @@ get_filename_component(PARENT_DIR ${PARENT_PATH} NAME)
create_test_sourcelist(${PARENT_DIR}_tests test_suite.c
# Add new tests here
bitmap_test.c
+ btree_test.c
crc32_test.c
hashtable_test.c
sha3_test.c
diff --git a/src/lib/tests/btree_test.c b/src/lib/tests/btree_test.c
new file mode 100644
index 00000000..257a7e37
--- /dev/null
+++ b/src/lib/tests/btree_test.c
@@ -0,0 +1,80 @@
+/*
+ * Ouroboros - Copyright (C) 2016 - 2017
+ *
+ * Test of the B-tree implementation
+ *
+ * Dimitri Staessens <dimitri.staessens@intec.ugent.be>
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License version 2 as
+ * published by the Free Software Foundation.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
+ */
+
+
+#include "btree.h"
+
+#include <stdio.h>
+#include <stdlib.h>
+
+#define MAX_BTREE_KEY 10000
+
+int btree_test(int argc,
+ char ** argv)
+{
+ struct btree * tree;
+
+ int i;
+
+ (void) argc;
+ (void) argv;
+
+ tree = btree_create(32);
+ if (tree == NULL)
+ return -1;
+
+ if (btree_search(tree, 8) != NULL) {
+ btree_destroy(tree);
+ return -1;
+ }
+
+ for(i = 0; i < MAX_BTREE_KEY; ++i)
+ if (btree_insert(tree, i, &argv)) {
+ printf("Failed to add element.\n");
+ btree_destroy(tree);
+ return -1;
+ }
+
+ for (i = 0; i < MAX_BTREE_KEY / 10; ++i)
+ if (btree_search(tree, rand() % MAX_BTREE_KEY) != &argv) {
+ printf("Added element not in tree.\n");
+ btree_destroy(tree);
+ return -1;
+ }
+
+ for (i = 0; i < MAX_BTREE_KEY / 10; ++i)
+ if (btree_remove(tree, i)) {
+ printf("Failed to remove element.\n");
+ btree_destroy(tree);
+ return -1;
+ }
+
+ for (i = 0; i < MAX_BTREE_KEY / 10; ++i)
+ if (btree_search(tree, rand() % MAX_BTREE_KEY / 10) != &argv) {
+ printf("Removed element found in tree.\n");
+ btree_destroy(tree);
+ return -1;
+ }
+
+ btree_destroy(tree);
+
+ return 0;
+}